Genome-resolved long-read sequencing expands known microbial diversity across terrestrial habitats
By Philip Hugenholtz, Mads Albertsen & Francesco Delogu
Depth-dependent Metagenome-Assembled Genomes of Agricultural Soils under Managed Aquifer Recharge | Scientific Data
By Laibin Huang, William R Horwath & Elad Levintal
Evaluating Quantitative Metagenomics for Environmental Monitoring of Antibiotic Resistance and Establishing Detection Limits
By Benjamin C Davis, Peter J Vikesland & Amy Pruden
Challenges in capturing the mycobiome from shotgun metagenome data: lack of software and databases - Microbiome
By Ekaterina Avershina, Trine B Rounge & Hanne C. Winther-Larsen
A metagenomic perspective on the microbial prokaryotic genome census
By Rekha Seshadri, Nikos Kyrpides & Dongying Wu
Metagenomic biodiversity assessment within an offshore wind farm
By Tom Van Der Valk, Liv Kristenssen Stranddorf & Tim Wilms
Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils - Microbiome
By Jenni Hultman, Minna K. Männistö & Tatiana A Demina
Metagenomics reveals contrasted responses of microbial communities to wheat straw amendment in cropland and grassland soils | Scientific Reports
By Sébastien Terrat, Pierre-alain Maron & Abad Chabbi
Metagenomic assemblies tend to break around antibiotic resistance genes
By Johan Bengtsson-Palme, Antti Karkman & Anna Abramova
Metagenomic analysis characterizes stage-specific gut microbiota in Alzheimer's disease | Molecular Psychiatry
By Qihao Guo, Xing-Ming Zhao & Wei-Hua Chen
High throughput single cell metagenomic sequencing with semi-permeable capsules: unraveling microbial diversity at the single-cell level in sewage and fecal microbiomes
By Frank M. Aarestrup, Rapolas Zilionis & Judit Szarvas
Metagenome reveals the midgut microbial community of Haemaphysalis qinghaiensis ticks collected from yaks and Tibetan sheep - Parasites & Vectors
By Guo-hua Liu, De-yong Duan & Tian-Yin Cheng
Metagenomic estimation of dietary intake from human stool
By Christian Diener, Hannah D Holscher & Karen Corbin
A metagenomic ‘dark matter’ enzyme catalyses oxidative cellulose conversion
By Clelton A Santos, Bernard Henrissat & Sacha Grisel
Metagenomic global survey and in-depth genomic analyses of Ruminococcus gnavus reveal differences across host lifestyle and health status
By Niels Plomp, Klaas Nico Faber & Nicolai Karcher
Metagenome-assembled-genomes recovered from the Arctic drift expedition MOSAiC | Scientific Data
By William Boulton, Asaf Salamov & Katja Metfies
Metagenome-guided culturomics for the targeted enrichment of gut microbes
By Jeremy Armetta, Troels Holger Vaaben & Simone S Li
Metagenome-assembled microbial genomes (n = 3448) of the oral microbiomes of Tibetan and Duroc pigs | Scientific Data
By Junjie Zhang & Tao Ye
Raiding nature's genetic toolbox for UV-C resistance by functional metagenomics | Scientific Reports
Improving the reporting of metagenomic virome-scale data | Communications Biology
By Wei-Shan Chang, Mang Shi & Jackie E Mahar
Host DNA depletion on frozen human respiratory samples enables successful metagenomic sequencing for microbiome studies | Communications Biology
By Michael J Tisza, Katrine L. Whiteson & J Kirk Harris
Evaluation of DNA extraction kits for long-read shotgun metagenomics using Oxford Nanopore sequencing for rapid taxonomic and antimicrobial resistance detection | Scientific Reports
By Marco Meola, Srinithi Purushothaman & Adrian Egli
Metagenomic analysis of deep-sea bacterial communities in the Makassar and Lombok Straits | Scientific Reports
By Charlie Ester De Fretes, Ocky Karna Radjasa & Dh Ahmad
DGCNN approach links metagenome-derived taxon and functional information providing insight into global soil organic carbon | npj Biofilms and Microbiomes
By Andrew L. Neal, Anna Paola Carrieri & Ritesh Krishna
Rapid species-level metagenome profiling and containment estimation with sylph
By Jim Shaw & William Yu
Towards predicting the geographical origin of ancient samples with metagenomic data | Scientific Reports
By J. Víctor Moreno-Mayar, Anna-Sapfo Malaspinas & Hannes Schroeder
Recovery of 1559 metagenome-assembled genomes from the East China Sea's low-oxygen region | Scientific Data
By Changjie Dong, Shujing Liu & Kai Tang
Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance
By Agnes Becsei, Patrick Munk & Frederique Pasquali
Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota | Scientific Data
By Natalia N. Ivanova, Robin R Rohwer & Emiley A Eloe-Fadrosh
Recovery of 240 metagenome-assembled genomes from coastal mariculture environments in South Korea | Scientific Data
By Woo Jun Sul, Hoon Je Seong & Sung Jae Ahn
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities | Scientific Data
By Kevin Vanneste, Sigrid De Keersmaecker & Kathleen Marchal
Non-redundant metagenome-assembled genomes of activated sludge reactors at different disturbances and scales | Scientific Data
By Soheil A. Neshat, Stefan Wuertz & Ezequiel Santillan